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Dr. Dr. Jan Egger

Funktionen

  • Hochschuldozent/in, Medizin

Aktuelle Veranstaltungen

Keine aktuellen Veranstaltungen.

Vergangene Veranstaltungen (max. 10)

Keine vergangenen Veranstaltungen.

Die folgenden Publikationen sind in der Online-Universitätsbibliographie der Universität Duisburg-Essen verzeichnet. Weitere Informationen finden Sie gegebenenfalls auch auf den persönlichen Webseiten der Person.

    Artikel in Zeitschriften

  • Gruber, Lennart Johannes; Egger, Jan; Bönsch, Andrea; Kraeima, Joep; Ulbrich, Max; van den Bosch, Vincent; Motmaen, Ila; Wilpert, Caroline; Ooms, Mark; Isfort, Peter; Hölzle, Frank; Puladi, Behrus
    Accuracy and Precision of Mandible Segmentation and Its Clinical Implications : Virtual Reality, Desktop Screen and Artificial Intelligence
    In: Expert Systems with Applications Jg. 239 (2024) 122275
    Online Volltext: dx.doi.org/
  • Li, Jianning; Ellis, David G.; Pepe, Antonio; Gsaxner, Christina; Aizenberg, Michele R.; Kleesiek, Jens; Egger, Jan
    Back to the Roots : Reconstructing Large and Complex Cranial Defects using an Image-based Statistical Shape Model
    In: Journal of Medical Systems Jg. 48 (2024) Nr. 1, 55
    Online Volltext: dx.doi.org/ (Open Access)
  • Hörst, Fabian; Rempe, Moritz; Heine, Lukas; Seibold, Constantin; Keyl, Julius; Baldini, Giulia; Ugurel, Selma; Siveke, Jens; Grünwald, Barbara; Egger, Jan; Kleesiek, Jens
    CellViT : Vision Transformers for precise cell segmentation and classification
    In: Medical Image Analysis Jg. 94 (2024) 103143
    Online Volltext: dx.doi.org/ (Open Access)
  • Li, Jianning; Dada, Amin; Puladi, Behrus; Kleesiek, Jens; Egger, Jan
    ChatGPT in healthcare : A taxonomy and systematic review
    In: Computer Methods and Programs in Biomedicine Jg. 245 (2024) 108013
    Online Volltext: dx.doi.org/ (Open Access)
  • Raufeisen, Johannes; Xie, Kunpeng; Hörst, Fabian; Braunschweig, Till; Li, Jianning; Kleesiek, Jens; Röhrig, Rainer; Egger, Jan; Leibe, Bastian; Hölzle, Frank; Hermans, Alexander; Puladi, Behrus
    Cyto R-CNN and CytoNuke Dataset : Towards reliable whole-cell segmentation in bright-field histological images
    In: Computer Methods and Programs in Biomedicine Jg. 252 (2024) 108215
    Online Volltext: dx.doi.org/ (Open Access)
  • Melchior, Claire; Isfort, Peter; Braunschweig, Till; Witjes, Max; Van den Bosch, Vincent; Rashad, Ashkan; Egger, Jan; de la Fuente, Matías; Röhrig, Rainer; Hölzle, Frank; Puladi, Behrus
    Development and validation of a cadaveric porcine Pseudotumor model for Oral Cancer biopsy and resection training
    In: BMC Medical Education Jg. 24 (2024) Nr. 1, 250
    Online Volltext: dx.doi.org/ (Open Access)
  • Moors, Jasper J.E.; Xu, Zhibin; Xie, Kunpeng; Rashad, Ashkan; Egger, Jan; Röhrig, Rainer; Hölzle, Frank; Puladi, Behrus
    Full-thickness skin graft versus split-thickness skin graft for radial forearm free flap donor site closure : Protocol for a systematic review and meta-analysis
    In: Systematic Reviews Jg. 13 (2024) Nr. 1, 74
    Online Volltext: dx.doi.org/ (Open Access)
  • Ferreira, André; Li, Jianning; Pomykala, Kelsey L.; Kleesiek, Jens; Alves, Victor; Egger, Jan
    GAN-based generation of realistic 3D volumetric data : A systematic review and taxonomy
    In: Medical Image Analysis Jg. 93 (2024) 103100
    Online Volltext: dx.doi.org/ (Open Access)
  • Dada, Amin; Ufer, Tim Leon; Kim, Moon; Hasin, Max; Spieker, Nicola; Forsting, Michael; Nensa, Felix; Egger, Jan; Kleesiek, Jens
    Information extraction from weakly structured radiological reports with natural language queries
    In: European Radiology Jg. 34 (2024) Nr. 1, S. 330 - 337
    Online Volltext: dx.doi.org/ (Open Access)
  • Motmaen, Ila; Xie, Kunpeng; Schönbrunn, Leon; Berens, Jeff; Grunert, Kim; Plum, Anna Maria; Raufeisen, Johannes; Ferreira, André; Hermans, Alexander; Egger, Jan; Hölzle, Frank; Truhn, Daniel; Puladi, Behrus
    Insights into Predicting Tooth Extraction from Panoramic Dental Images: Artificial Intelligence vs. Dentists
    In: Clinical Oral Investigations Jg. 28 (2024) Nr. 7, 381
    Online Volltext: dx.doi.org/ (Open Access)
  • Krieger, Kathrin; Egger, Jan; Kleesiek, Jens; Gunzer, Matthias; Chen, Jianxu
    Multisensory Extended Reality Applications Offer Benefits for Volumetric Biomedical Image Analysis in Research and Medicine
    In: Journal of Imaging Informatics in Medicine (2024) in press
    Online Volltext: dx.doi.org/ (Open Access)
  • Puladi, Behrus; Gsaxner, Christina; Kleesiek, Jens; Hölzle, Frank W.; Röhrig, Rainer; Egger, Jan
    The impact and opportunities of large language models like ChatGPT in oral and maxillofacial surgery : a narrative review
    In: International Journal of Oral and Maxillofacial Surgery Jg. 53 (2024) Nr. 1, S. 78 - 88
    Online Volltext: dx.doi.org/ (Open Access)
  • Mayer, Christian; Pepe, Antonio; Hossain, Sophie; Karner, Barbara; Arnreiter, Melanie; Kleesiek, Jens; Schmid, Johannes; Janisch, Michael; Hannes, Deutschmann; Fuchsjäger, Michael; Zimpfer, Daniel; Egger, Jan; Mächler, Heinrich
    Type B Aortic Dissection CTA Collection with True and False Lumen Expert Annotations for the Development of AI-based Algorithms
    In: Scientific Data Jg. 11 (2024) Nr. 1, 596
    Online Volltext: dx.doi.org/ (Open Access)
  • Rempe, Moritz; Mentzel, Florian; Pomykala, Kelsey L.; Haubold, Johannes; Nensa, Felix; Kroeninger, Kevin; Egger, Jan; Kleesiek, Jens
    k-strip : A novel segmentation algorithm in k-space for the application of skull stripping
    In: Computer Methods and Programs in Biomedicine Jg. 243 (2024) 107912
    Online Volltext: dx.doi.org/ (Open Access)
  • Luijten, Gijs; Gsaxner, Christina; Li, Jianning; Pepe, Antonio; Ambigapathy, Narmada; Kim, Moon; Chen, Xiaojun; Kleesiek, Jens; Hölzle, Frank; Puladi, Behrus; Egger, Jan
    3D surgical instrument collection for computer vision and extended reality
    In: Scientific Data Jg. 10 (2023) Nr. 1, 796
    Online Volltext: dx.doi.org/ (Open Access)
  • Kim, Moon; Seifert, Robert; Fragemann, Jana; Kersting, David; Murray, Jacob; Jonske, Frederic; Pomykala, Kelsey L.; Egger, Jan; Fendler, Wolfgang; Herrmann, Ken; Kleesiek, Jens
    Evaluation of thresholding methods for the quantification of [⁶⁸Ga]Ga-PSMA-11 PET molecular tumor volume and their effect on survival prediction in patients with advanced prostate cancer undergoing [¹⁷⁷Lu]Lu-PSMA-617 radioligand therapy
    In: European Journal of Nuclear Medicine and Molecular Imaging Jg. 50 (2023) Nr. 7, S. 2196 - 2209
    Online Volltext: dx.doi.org/ (Open Access)
  • Hörst, Fabian; Ting, Saskia; Liffers, Sven-Thorsten; Pomykala, Kelsey L.; Steiger, Katja; Albertsmeier, Markus; Angele, Martin K.; Lorenzen, Sylvie; Quante, Michael; Weichert, Wilko; Egger, Jan; Siveke, Jens; Kleesiek, Jens
    Histology-Based Prediction of Therapy Response to Neoadjuvant Chemotherapy for Esophageal and Esophagogastric Junction Adenocarcinomas Using Deep Learning
    In: JCO Clinical Cancer Informatics (JCO CCI) Jg. 7 (2023) S. e2300038
    Online Volltext: dx.doi.org/ (Open Access)
  • Li, Jianning; Ferreira, André; Puladi, Behrus; Alves, Victor; Kamp, Michael; Kim, Moon; Nensa, Felix; Kleesiek, Jens; Ahmadi, Seyed-Ahmad; Egger, Jan
    Open-source skull reconstruction with MONAI
    In: SoftwareX Jg. 23 (2023) 101432
    Online Volltext: dx.doi.org/ (Open Access)
  • Li, Jianning; Gsaxner, Christina; Pepe, Antonio; Schmalstieg, Dieter; Kleesiek, Jens; Egger, Jan
    Sparse convolutional neural network for high-resolution skull shape completion and shape super-resolution
    In: Scientific Reports Jg. 13 (2023) Nr. 1, 20229
    Online Volltext: dx.doi.org/ (Open Access)
  • Li, Jianning; Ellis, David G.; Kodym, Oldřich; Rauschenbach, Laurèl; Rieß, Christoph; Sure, Ulrich; Wrede, Karsten; Alvarez, Carlos M.; Wodzinski, Marek; Daniol, Mateusz; Hemmerling, Daria; Mahdi, Hamza; Clement, Allison; Kim, Evan; Fishman, Zachary; Whyne, Cari M.; Mainprize, James G.; Hardisty, Michael R.; Pathak, Shashwat; Sindhura, Chitimireddy; Gorthi, Rama Krishna Sai S.; Kiran, Degala Venkata; Gorthi, Subrahmanyam; Yang, Bokai; Fang, Ke; Li, Xingyu; Kroviakov, Artem; Yu, Lei; Jin, Yuan; Pepe, Antonio; Gsaxner, Christina; Herout, Adam; Alves, Victor; Španěl, Michal; Aizenberg, Michele R.; Kleesiek, Jens; Egger, Jan
    Towards clinical applicability and computational efficiency in automatic cranial implant design : An overview of the AutoImplant 2021 cranial implant design challenge
    In: Medical Image Analysis Jg. 88 (2023) 102865
    Online Volltext: dx.doi.org/
  • Ester, Oliver; Hörst, Fabian; Seibold, Constantin; Keyl, Julius; Ting, Saskia; Vasileiadis, Nikolaos; Schmitz, Jessica; Ivanyi, Philipp; Grünwald, Viktor; Bräsen, Jan Hinrich; Egger, Jan; Kleesiek, Jens
    Valuing vicinity : Memory attention framework for context-based semantic segmentation in histopathology
    In: Computerized Medical Imaging and Graphics Jg. 107 (2023) 102238
    Online Volltext: dx.doi.org/ (Open Access)
  • Fijačko, Nino; Metličar, Špela; Kleesiek, Jens; Egger, Jan; Chang, Todd P
    Virtual Reality, Augmented Reality, Augmented Virtuality, or Mixed Reality in cardiopulmonary resuscitation : Which Extended Reality am I using for teaching adult basic life support?
    In: Resuscitation Jg. 192 (2023) 109973
    Online Volltext: dx.doi.org/
  • Strack, Christian; Pomykala, Kelsey L.; Schlemmer, Heinz-Peter; Egger, Jan; Kleesiek, Jens
    “A net for everyone” : fully personalized and unsupervised neural networks trained with longitudinal data from a single patient
    In: BMC Medical Imaging Jg. 23 (2023) Nr. 1, 174
    Online Volltext: dx.doi.org/ Online Volltext (Open Access)
  • Xu, Jiangchang; Zeng, Bolun; Egger, Jan; Wang, Chunliang; Smedby, Örjan; Jiang, Xiaoyi; Chen, Xiaojun
    A review on AI-based medical image computing in head and neck surgery
    In: Physics in Medicine and Biology Jg. 67 (2022) Nr. 17, 17TR01
    Online Volltext: dx.doi.org/
  • Radl, Lukas; Jin, Yuan; Pepe, Antonio; Li, Jianning; Gsaxner, Christina; Zhao, Fen-hua; Egger, Jan
    AVT : Multicenter aortic vessel tree CTA dataset collection with ground truth segmentation masks
    In: Data in Brief Jg. 40 (2022) 107801
    Online Volltext: dx.doi.org/ (Open Access)
  • Gonçalves, Maria; Gsaxner, Christina; Ferreira, André; Li, Jianning; Puladi, Behrus; Kleesiek, Jens; Egger, Jan; Alves, Victor
    Radiomics in Head and Neck Cancer Outcome Predictions
    In: Diagnostics Jg. 12 (2022) Nr. 11, 2733
    Online Volltext: dx.doi.org/ Online Volltext (Open Access)
  • Egger, Jan; Wild, Daniel; Weber, Maximilian; Bedoya, Christopher A. Ramirez; Karner, Florian; Prutsch, Alexander; Schmied, Michael; Dionysio, Christina; Krobath, Dominik; Jin, Yuan; Gsaxner, Christina; Li, Jianning; Pepe, Antonio
    Studierfenster : an Open Science Cloud-Based Medical Imaging Analysis Platform
    In: Journal of Digital Imaging Jg. 35 (2022) Nr. 2, S. 340 - 355
    Online Volltext: dx.doi.org/ (Open Access)

    • Aufsätze

  • Ferreira, André; Li, Jianning; Pomykala, Kelsey L.; Kleesiek, Jens; Alves, Victor; Egger, Jan
    Corrigendum to : GAN-based generation of realistic 3D volumetric data: A systematic review and taxonomy
    In: Medical Image Analysis (2024) 103174 in press
    Online Volltext: dx.doi.org/ (Open Access)

    • Vorworte / Nachworte

  • Fragemann, Jana; Li, Jianning; Liu, Xiao; Tsaftaris, Sotirios A.; Egger, Jan; Kleesiek, Jens
    Preface
    In: Medical Applications with Disentanglements: First MICCAI Workshop, MAD 2022, Held in Conjunction with MICCAI 2022, Singapore, September 22, 2022, Proceedings / Fragemann, Jana; Li, Jianning; Liu, Xiao; Tsaftaris, Sotirios A.; Egger, Jan; Kleesiek, Jens; First MICCAI Workshop, MAD 2022, Held in Conjunction with MICCAI 2022, 22.09.2022, Singapore (2023) S. VI
  • Wachinger, Christian; Paniagua, Beatriz; Elhabian, Shireen; Li, Jianning; Egger, Jan
    Preface
    In: Shape in Medical Imaging: Proceedings / Wachinger, Christian; Paniagua, Beatriz; Elhabian, Shireen; Li, Jianning; Egger, Jan; International Workshop, ShapeMI 2023, Held in Conjunction with MICCAI 2023, October 8, 2023, Vancouver, BC, Canada (2023)
  • Li, Jianning; Egger, Jan
    Preface
    In: Towards the Automatization of Cranial Implant Design in Cranioplasty II: Proceedings / Second Challenge, AutoImplant 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, October 1, 2021 / Li, Jianning; Egger, Jan (Hrsg.) (2021) S. v
    Online Volltext: dx.doi.org/

    • Abstracts

  • Karner, B.; Arnreiter, M.; Mayer, C.; Hossain, S.; Schmid, J.; Pepe, A.; Fuchsjäger, M.; Zimpfer, D.; Egger, Jan; Mächler, H.;
    Three-dimensional Image Segmentation Permits Rapid Morphologic Assessment and Risk Stratification in Type B Aortic Dissection
    Österreichische Kardiologische Gesellschaft Jahrestagung 2023 "Wissenschaft und Praxis im Dialog", 31. Mai bis 3. Juni 2023, Salzburg, Österreich,
    In: Wiener Klinische Wochenschrift Jg. 135 (2023) Nr. 2, S. S375 - S376
  • Hossain, S.; Mayer, C.; Schmid, J.; Pepe, A.; Arnreiter, M.; Karner, B.; Fuchsjäger, M.; Zimpfer, D.; Egger, Jan; Mächler, H.;
    Type B Aortic Dissections : How to perform CT-Segmentations using the Imaging Tool 3D Slicer
    Österreichische Kardiologische Gesellschaft Jahrestagung 2023 "Wissenschaft und Praxis im Dialog", 31. Mai bis 3. Juni 2023, Salzburg, Österreich,
    In: Wiener Klinische Wochenschrift Jg. 135 (2023) Nr. 2, S. S406 - S407

    • Beiträge in Sammelwerken und Tagungsbänden

  • Hörst, Fabian; Schaheer, Sajad H.; Baldini, Giulia; Bahnsen, Fin H.; Egger, Jan; Kleesiek, Jens
    Accelerating Artificial Intelligence-based Whole Slide Image Analysis with an Optimized Preprocessing Pipeline
    In: Bildverarbeitung für die Medizin 2024: Proceedings / German Conference on Medical Image Computing; 10-12 March 2024; Erlangen / Maier, Andreas; Deserno, Thomas M.; Handels, Heinz; Maier-Hein, Klaus; Palm, Christoph; Tolxdorff, Thomas (Hrsg.) 2024, S. 356 - 361
    Online Volltext: dx.doi.org/
  • Li, Jianning; Pepe, Antonio; Luijten, Gijs; Schwarz-Gsaxner, Christina; Kleesiek, Jens; Egger, Jan
    Anatomy Completor : A Multi-class Completion Framework for 3D Anatomy Reconstruction
    In: Shape in Medical Imaging: Proceedings / Wachinger, Christian; Paniagua, Beatriz; Elhabian, Shireen; Li, Jianning; Egger, Jan; International Workshop, ShapeMI 2023, Held in Conjunction with MICCAI 2023, October 8, 2023, Vancouver, BC, Canada 2023, S. 1 - 14
    Online Volltext: dx.doi.org/
  • Fragemann, Jana; Liu, Xiao; Li, Jianning; Tsaftaris, Sotirios A.; Egger, Jan; Kleesiek, Jens
    Applying Disentanglement in the Medical Domain : An Introduction for the MAD Workshop
    In: Medical Applications with Disentanglements: First MICCAI Workshop, MAD 2022, Held in Conjunction with MICCAI 2022, Singapore, September 22, 2022, Proceedings / Fragemann, Jana; Li, Jianning; Liu, Xiao; Tsaftaris, Sotirios A.; Egger, Jan; Kleesiek, Jens; First MICCAI Workshop, MAD 2022, Held in Conjunction with MICCAI 2022, 22.09.2022, Singapore 2023, S. 3 - 11
    Online Volltext: dx.doi.org/
  • Adilova, Linara; Abourayya, Amr; Li, Jianning; Dada, Amin; Petzka, Henning; Egger, Jan; Kleesiek, Jens; Kamp, Michael
    FAM: Relative Flatness Aware Minimization
    In: Proceedings of the 2nd Annual Workshop on Topology, Algebra, and Geometry in Machine Learning / 2nd Annual Workshop on Topology, Algebra, and Geometry in Machine Learning, TAG-ML 2023, held at the International Conference on Machine Learning, ICML 2023; Honolulu; 28 July 2023 2023, S. 37 - 49
  • Sulakhe, Harsh; Li, Jianning; Egger, Jan; Goyal, Poonam
    CranGAN : Adversarial Point Cloud Reconstruction for patient-specific Cranial Implant Design
    In: 44th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) / 44. IEEE Engineering in Medicine and Biology Society ; Annual International Conference, Tuesday, July 12-Friday, July 15, 2022, Glasgow 2022, S. 603 - 608
    Online Volltext: dx.doi.org/
  • Gsaxner, Christina; Pepe, Antonio; Schmalstieg, Dieter; Li, Jianning; Egger, Jan
    Inside-out instrument tracking for surgical navigation in augmented reality
    In: Proceedings of the 27th ACM Symposium on Virtual Reality Software and Technology / VRST '21: 27th ACM Symposium on Virtual Reality Software and Technology, Osaka Japan, December 8 - 10, 2021 2021
    Online Volltext: dx.doi.org/
  • Li, Jianning; Pepe, Antonio; Gsaxner, Christina; Jin, Yuan; Egger, Jan
    Learning to Rearrange Voxels in Binary Segmentation Masks for Smooth Manifold Triangulation
    In: Towards the Automatization of Cranial Implant Design in Cranioplasty II: Proceedings / Second Challenge, AutoImplant 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, October 1, 2021 / Li, Jianning; Egger, Jan (Hrsg.) 2021, S. 45 - 62
    Online Volltext: dx.doi.org/ (Open Access)
  • Yu, Lei; Li, Jianning; Egger, Jan
    PCA-Skull : 3D Skull Shape Modelling Using Principal Component Analysis
    In: Towards the Automatization of Cranial Implant Design in Cranioplasty II: Proceedings / Second Challenge, AutoImplant 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, October 1, 2021 / Li, Jianning; Egger, Jan (Hrsg.) 2021, S. 105 - 115
    Online Volltext: dx.doi.org/
  • Kroviakov, Artem; Li, Jianning; Egger, Jan
    Sparse Convolutional Neural Network for Skull Reconstruction
    In: Towards the Automatization of Cranial Implant Design in Cranioplasty II: Proceedings / Second Challenge, AutoImplant 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, October 1, 2021 / Li, Jianning; Egger, Jan (Hrsg.) 2021, S. 80 - 94
    Online Volltext: dx.doi.org/

    • Bücher/Sammelwerke/Tagungsbände

  • Wachinger, Christian; Paniagua, Beatriz; Elhabian, Shireen; Li, Jianning; Egger, Jan;
    Shape in Medical Imaging : Proceedings
    International Workshop, ShapeMI 2023, Held in Conjunction with MICCAI 2023, October 8, 2023, Vancouver, BC, Canada,
    In: Lecture Notes in Computer Science Cham; Berlin; Heidelberg Jg. 14350 (2023) 302 Seiten
    Online Volltext: dx.doi.org/