The phycology team

Prof. Dr. Bank Beszteri

Fakultät für Biologie / Phykologie

Address
Universitätsstr. 2
45141 Essen
Room
S05 V05 E26
Phone
+49 (0) 201 183 3102
E-Mail
bank.beszteri@uni-due.de
Website
https://www.uni-due.de/phycology

Functions

  • Professor/in, Phykologie

The following publications are listed in the online university bibliography of the University of Duisburg-Essen. Further information may also be found on the person's personal web pages.

    Journal articles

  • Mayombo, Ntambwe Albert Serge; Dani, Mimoza; Kloster, Michael; Vidakovic, Danijela; Buchner, Dominik; Burfeid-Castellanos, Andrea M.; Beszteri, Bank
    Assessment of microphytobenthos communities in the Kinzig catchment using photosynthesis-related traits, digital light microscopy and 18S-V9 amplicon sequencing
    In: Frontiers in Ecology and Evolution Vol. 12 (2024) 1422925
    Online Full Text: dx.doi.org/ (Open Access)
  • Vidakovic, Danijela; Mayombo, Ntambwe Albert Serge; Burfeid Castellanos, Andrea; Kloster, Michael; Beszteri, Bank
    Assessment of the ecological status of large lowland rivers (Sava and Tisa, Serbia) based on digital microscopic investigation of the diatom communities
    In: Diatom Research Vol. 38 (2024) Nr. 4, pp. 229 - 244
    Online Full Text: dx.doi.org/
  • Vidakovic, Danijela; Mayombo, Ntambwe Albert Serge; Burfeid Castellanos, Andrea; Kloster, Michael; Beszteri, Bank
    Diatom metabarcoding as a tool to assess the water quality of two large tributaries of the Danube River
    In: Ecological Indicators Vol. 168 (2024) 112793
    Online Full Text: dx.doi.org/ (Open Access)
  • Kaijser, Willem; Lorenz, Armin; Brauer, Verena; Burfeid Castellanos, Andrea; David, Gwendoline M.; Nuy, Julia; Baikova, Daria; Beszteri, Bank; Gillmann, Svenja M.; Kiesel, Jens; Mayombo, Ntambwe Albert Serge; Peters, Kristin; Rettig, Katharina; Rolauffs, Peter; Haase, Peter; Hering, Daniel
    Differential associations of five riverine organism groups with multiple stressors
    In: Science of the Total Environment Vol. 934 (2024) 173105
    Online Full Text: dx.doi.org/ (Open Access)
  • Lundholm, Nina; Christensen, Anneliese L.; Olesen, Anna K.J.; Beszteri, Bank; Eggers, Sarah Lena; Krock, Bernd; Altenburger, Andreas
    Diversity, toxicity, and distribution of potentially toxic diatoms in Antarctic waters : With description of Pseudo-nitzschia meridionalis sp. nov. and P. glacialis sp. nov.
    In: Harmful Algae Vol. 139 (2024) 102724
    Online Full Text: dx.doi.org/ (Open Access)
  • Mayombo, Ntambwe Albert Serge; Burfeid-Castellanos, Andrea M.; Vermiert, Anna-Maria; Madge Pimentel, Iris; Rehsen, Philipp M.; Dani, Mimoza; Jasinski, Christina; Spyra, Marzena Agata; Kloster, Michael; Vidakovic, Danijela; Buchner, Dominik; Beszteri, Bank
    Functional and compositional responses of stream microphytobenthic communities to multiple stressors increase and release in a mesocosm experiment
    In: Science of the Total Environment Vol. 943 (2024) 173670
    Online Full Text: dx.doi.org/ (Open Access)
  • Farias, Luan; Beszteri, Bank; Burfeid Castellanos, Andrea M.; Doliwa, Annemie; Enss, Julian; Feld, Christian K.; Grabner, Daniel; Lampert, Kathrin P.; Mayombo, Ntambwe A. Serge; Prati, Sebastian; Schürings, Christian; Smollich, Esther; Schäfer, Ralf B.; Sures, Bernd; Le, T.T. Yen
    Influence of salinity on the thermal tolerance of aquatic organisms
    In: Science of the Total Environment Vol. 953 (2024) 176120
    Online Full Text: dx.doi.org/ (Open Access)
  • Burfeid Castellanos, Andrea M.; Mones, Phillip; Dani, Mimoza; Beszteri, Bánk
    Non-perennial rivers and streams in extreme hydrological conditions : Comparing the effectiveness of amplicon sequencing and digital microscopy for diatom biodiversity appraisal
    In: Frontiers in Ecology and Evolution Vol. 12 (2024) 1355018
    Online Full Text: dx.doi.org/ Online Full Text (Open Access)
  • Venkataramanan, Aishwarya; Kloster, Michael; Burfeid-Castellanos, Andrea; Dani, Mimoza; Mayombo, Ntambwe A. S; Vidakovic, Danijela; Langenkämper, Daniel; Tan, Mingkun; Pradalier, Cedric; Nattkemper, Tim; Laviale, Martin; Beszteri, Bánk
    “UDE DIATOMS in the Wild 2024” : A new image dataset of freshwater diatoms for training deep learning models
    In: GigaScience Vol. 13 (2024) giae087
    Online Full Text: dx.doi.org/ (Open Access)
  • Vidakovic, Danijela; Levkov, Zlatko; Krizmanić, Jelena; Beszteri, Bank; Gavrilović, Bojan; Ćirić, Miloš
    A new small-celled naviculoid diatom species, Mayamaea pannonica sp. nov. (Bacillariophyceae) from soda pans in Serbia
    In: Phycologia Vol. 62 (2023) Nr. 3, pp. 268 - 276
    Online Full Text: dx.doi.org/
  • Kloster, Michael; Burfeid-Castellanos, Andrea M.; Langenkämper, Daniel; Nattkemper, Tim W.; Beszteri, Bank
    Improving deep learning-based segmentation of diatoms in gigapixel-sized virtual slides by object-based tile positioning and object integrity constraint
    In: PLoS ONE Vol. 18 (2023) Nr. 2, e0272103
    Online Full Text: dx.doi.org/ (Open Access)
  • Le, T. T. Yen; Becker, Alina; Kleinschmidt, Jana; Mayombo, Ntambwe Albert Serge; Farias, Luan; Beszteri, Sara; Beszteri, Bank
    Revealing Interactions between Temperature and Salinity and Their Effects on the Growth of Freshwater Diatoms by Empirical Modelling
    In: Phycology Vol. 3 (2023) Nr. 4, pp. 413 - 435
    Online Full Text: dx.doi.org/ (Open Access)
  • Vos, Matthijs; Hering, Daniel; Gessner, Mark O.; Leese, Florian; Schäfer, Ralf B.; Tollrian, Ralph; Boenigk, Jens; Haase, Peter; Meckenstock, Rainer; Baikova, Daria; Bayat, Helena; Beermann, Arne; Beißer, Daniela; Beszteri, Bánk; Birk, Sebastian; Boden, Lisa; Brauer, Verena; Brauns, Mario; Buchner, Dominik; Burfeid-Castellanos, Andrea; David, Gwendoline; Deep, Aman; Doliwa, Annemie; Dunthorn, Micah; Enß, Julian; Escobar-Sierra, Camilo; Feld, Christian K.; Fohrer, Nicola; Grabner, Daniel; Hadziomerovic, Una; Jähnig, Sonja C.; Jochmann, Maik; Khaliq, Shaista; Kiesel, Jens; Kuppels, Annabel; Lampert, Kathrin P.; Le, T.T. Yen; Lorenz, Armin W.; Madariaga, Graciela Medina; Meyer, Benjamin; Pantel, Jelena H.; Pimentel, Iris Madge; Mayombo, Ntambwe Serge; Nguyen, Hong Hanh; Peters, Kristin; Pfeifer, Svenja M.; Prati, Sebastian; Probst, Alexander J.; Reiner, Dominik; Rolauffs, Peter; Schlenker, Alexandra; Schmidt, Torsten C.; Shah, Mana; Sieber, Guido; Stach, Tom Lennard; Tielke, Ann-Kathrin; Vermiert, Anna-Maria; Weiss, Martina; Weitere, Markus; Sures, Bernd
    The Asymmetric Response Concept explains ecological consequences of multiple stressor exposure and release
    In: Science of the Total Environment Vol. 872 (2023) 162196
    Online Full Text: dx.doi.org/
  • Kloster, Michael; Beszteri, Bank
    Virtuelle digitale Lichtmikroskopie in der Lehre : Mit UDE BioSLiDES im Webbrowser die große Welt der kleinen Dinge erkunden
    In: Biologie in unserer Zeit Vol. 53 (2023) Nr. 2, pp. 164 - 171
    Online Full Text: dx.doi.org/ (Open Access)
  • Burfeid-Castellanos, Andrea M.; Kloster, Michael; Beszteri, Sara; Postel, Ute; Spyra, Marzena; Zurowietz, Martin; Nattkemper, Tim W.; Beszteri, Bank
    A Digital Light Microscopic Method for Diatom Surveys Using Embedded Acid-Cleaned Samples
    In: Water Vol. 14 (2022) Nr. 20, 3332
    Online Full Text: dx.doi.org/ (Open Access)
  • Monsees, Indra; Turzynski, Victoria; Esser, Sarah P.; Soares, Andre; Timmermann, Lara I.; Weidenbach, Katrin; Banas, Jarno; Kloster, Michael; Beszteri, Bank; Schmitz, Ruth A.; Probst, Alexander J.
    Erratum for Monsees et al., “Label-Free Raman Microspectroscopy for Identifying Prokaryotic Virocells”
    In: mSystems Vol. 7 (2022) Nr. 2, e00162-22
    Online Full Text: dx.doi.org/ (Open Access)
  • Monsees, Indra; Turzynski, Victoria; Esser, Sarah P.; Soares, André; Timmermann, Lara I.; Weidenbach, Katrin; Banas, Jarno; Kloster, Michael; Beszteri, Bank; Schmitz, Ruth A.; Probst, Alexander J.
    Label-Free Raman Microspectroscopy for Identifying Prokaryotic Virocells
    In: mSystems Vol. 7 (2022) Nr. 1, e01505-21
    Online Full Text: dx.doi.org/ (Open Access)
  • Ye, Naihao; Han, Wentao; Toseland, Andrew; Wang, Yitao; Fan, Xiao; Xu, Dong; van Oosterhout, Cock; Aslam, Shazia N.; Barry, Kerrie; Beszteri, Bank; Brussaard, Corina; Clum, Alicia; Copeland, Alex; Daum, Chris; Duncan, Anthony; Eloe-Fadrosh, Emiley; Fong, Allison; Foster, Brian; Foster, Bryce; Ginzburg, Michael; Huntemann, Marcel; Ivanova, Natalia N.; Kyrpides, Nikos C.; Martin, Kara; Moulton, Vincent; Mukherjee, Supratim; Palaniappan, Krishnaveni; Reddy, T. B. K.; Roux, Simon; Schmidt, Katrin; Strauss, Jan; Timmermans, Klaas; Tringe, Susannah G.; Underwood, Graham J. C.; Valentin, Klaus U.; van de Poll, Willem H.; Varghese, Neha; Grigoriev, Igor V.; Tagliabue, Alessandro; Zhang, Jian; Zhang, Yan; Ma, Jian; Qiu, Huan; Li, Youxun; Zhang, Xiaowen; Mock, Thomas
    The role of zinc in the adaptive evolution of polar phytoplankton
    In: Nature Ecology & Evolution Vol. 6 (2022) Nr. 6, pages 965-978
    Online Full Text: dx.doi.org/ Online Full Text (Open Access)
  • Burfeid-Castellanos, Andrea M.; Martín-Martín, Rafael P.; Kloster, Michael; Angulo-Preckler, Carlos; Avila, Conxita; Beszteri, Bank
    Epiphytic diatom community structure and richness is determined by macroalgal host and location in the South Shetland Islands (Antarctica)
    In: PLoS ONE Vol. 16 (2021) Nr. 4, pp. e0250629
    Online Full Text: dx.doi.org/ Online Full Text (Open Access)
  • Olesen, Anna J.; Leithoff, Anneliese; Altenburger, Andreas; Krock, Bernd; Beszteri, Bank; Eggers, Sarah Lena; Lundholm, Nina
    First Evidence of the Toxin Domoic Acid in Antarctic Diatom Species
    In: Toxins Vol. 13 (2021) Nr. 2, pp. 93
    Online Full Text: dx.doi.org/ (Open Access)
  • Martin, Kara; Schmidt, Katrin; Toseland, Andrew; Boulton, Chris A.; Barry, Kerrie; Beszteri, Bank; Brussaard, Corina P. D.; Clum, Alicia; Daum, Chris G.; Eloe-Fadrosh, Emiley; Fong, Allison; Foster, Brian; Foster, Bryce; Ginzburg, Michael; Huntemann, Marcel; Ivanova, Natalia N.; Kyrpides, Nikos C.; Lindquist, Erika; Mukherjee, Supratim; Palaniappan, Krishnaveni; Reddy, T.B.K.; Rizkallah, Mariam R.; Roux, Simon; Timmermans, Klaas; Tringe, Susannah G.; van de Poll, Willem H.; Varghese, Neha; Valentin, Klaus U.; Lenton, Timothy M.; Grigoriev, Igor V.; Leggett, Richard M.; Moulton, Vincent; Mock, Thomas
    The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole
    In: Nature Communications Vol. 12 (2021) Nr. 1, 5483
    Online Full Text: dx.doi.org/ (Open Access)
  • Borsch, Thomas; Stevens, Albert-Dieter; Häffner, Eva; Güntsch, Anton; Berendsohn, Walter G.; Appelhans, Marc; Barilaro, Christina; Beszteri, Bank; Blattner, Frank; Bossdorf, Oliver; Dalitz, Helmut; Dressler, Stefan; Duque-Thüs, Rhinaixa; Esser, Hans-Joachim; Franzke, Andreas; Goetze, Dethardt; Grein, Michaela; Grünert, Uta; Hellwig, Frank; Hentschel, Jörn; Hörandl, Elvira; Janßen, Thomas; Jürgens, Norbert; Kadereit, Gudrun; Karisch, Timm; Koch, Marcus; Müller, Frank; Müller, Jochen; Ober, Dietrich; Porembski, Stefan; Poschlod, Peter; Printzen, Christian; Röser, Martin; Sack, Peter; Schlüter, Philipp; Schmidt, Marco; Schnittler, Martin; Scholler, Markus; Schultz, Matthias; Seeber, Elke; Simmel, Josef; Stiller, Michael; Thiv, Mike; Thüs, Holger; Tkach, Natalia; Triebel, Dagmar; Warnke, Ursula; Weibulat, Tanja; Wesche, Karsten; Yurkov, Andrey; Zizka, Georg
    A complete digitization of German herbaria is possible, sensible and should be started now
    In: Research Ideas and Outcomes (RIO) Vol. 6 (2020) pp. e50675
    Online Full Text: dx.doi.org/ (Open Access)
  • Postel, Ute; Glemser, Barbara; Salazar Alekseyeva, Katherine; Eggers, Sarah Lena; Groth, Marco; Glöckner, Gernot; John, Uwe; Mock, Thomas; Klemm, Kerstin; Valentin, Klaus; Beszteri, Bank
    Adaptive divergence across Southern Ocean gradients in the pelagic diatom Fragilariopsis kerguelensis
    In: Molecular Ecology Vol. 29 (2020) Nr. 24, pp. 4913 - 4924
    Online Full Text: dx.doi.org/ (Open Access)
  • Burfeid-Castellanos, Andrea M.; Kloster, Michael; Cambra, Jaume; Beszteri, Bank
    Both hydrology and physicochemistry influence diatom morphometry
    In: Diatom Research Vol. 35 (2020) Nr. 4, pp. 315 - 326
    Online Full Text: dx.doi.org/
  • Gemeinholzer, Birgit; Vences, Miguel; Beszteri, Bank; Bruy, Teddy; Felden, Janine; Kostadinov, Ivaylo; Miralles, Aurélien; Nattkemper, Tim W.; Printzen, Christian; Renz, Jasmin; Rybalka, Nataliya; Schuster, Tanja; Weibulat, Tanja; Wilke, Thomas; Renner, Susanne S.
    Data storage and data re-use in taxonomy : The need for improved storage and accessibility of heterogeneous data
    In: Organisms Diversity and Evolution Vol. 20 (2020) Nr. 1, pp. 1 - 8
    Online Full Text: dx.doi.org/ (Open Access)
  • Kloster, Michael; Langenkämper, Daniel; Zurowietz, Martin; Beszteri, Bank; Nattkemper, Tim W.
    Deep learning-based diatom taxonomy on virtual slides
    In: Scientific Reports Vol. 10 (2020) Nr. 1, pp. 14416
    Online Full Text: dx.doi.org/ Online Full Text (Open Access)
  • Beszteri, Bank; Havermans, Charlotte; Auel, Holger; Hagen, Wilhelm; Trimborn, Scarlett
    Polares Plankton : Kleinlebewesen im sich wandelnden Südpolarmeer
    In: Biologie in unserer Zeit Vol. 50 (2020) Nr. 1, pp. 28 - 35
    Online Full Text: dx.doi.org/ (Open Access)
  • Miralles, Aurélien; Bruy, Teddy; Wolcott, Katherine; Scherz, Mark D.; Begerow, Dominik; Beszteri, Bank; Bonkowski, Michael; Felden, Janine; Gemeinholzer, Birgit; Glaw, Frank; Glöckner, Frank Oliver; Hawlitschek, Oliver; Kostadinov, Ivaylo; Nattkemper, Tim W.; Printzen, Christian; Renz, Jasmin; Rybalka, Nataliya; Stadler, Marc; Weibulat, Tanja; Wilke, Thomas; Renner, Susanne S.; Vences, Miguel
    Repositories for taxonomic data : Where we are and what is missing
    In: Systematic Biology Vol. 69 (2020) Nr. 6, pp. 1231 - 1253
    Online Full Text: dx.doi.org/ (Open Access)
  • Glemser, Barbara; Kloster, Michael; Esper, Oliver; Eggers, Sarah Lena; Kauer, Gerhard; Beszteri, Bank
    Biogeographic differentiation between two morphotypes of the Southern Ocean diatom Fragilariopsis kerguelensis
    In: Polar Biology Vol. 42 (2019) Nr. 7, pp. 1369 - 1376
    Online Full Text: dx.doi.org/ (Open Access)
  • Kloster, Michael; Rigual-Hernández, Andrés S.; Armand, Leanne K.; Kauer, Gerhard; Trull, Thomas W.; Beszteri, Bank
    Temporal changes in size distributions of the Southern Ocean diatom Fragilariopsis kerguelensis through high-throughput microscopy of sediment trap samples
    In: Diatom Research Vol. 34 (2019) Nr. 3, pp. 133 - 147
    Online Full Text: dx.doi.org/ (Open Access)
  • Kloster, Michael; Kauer, Gerhard; Esper, Oliver; Fuchs, Nike; Beszteri, Bank
    Morphometry of the diatom Fragilariopsis kerguelensis from Southern Ocean sediment : High-throughput measurements show second morphotype occurring during glacials
    In: Marine Micropaleontology Vol. 143 (2018) pp. 70 - 79
    Online Full Text: dx.doi.org/ (Open Access)
  • Beszteri, Bank; Allen, Claire; Almandoz, Gastón O.; Armand, Leanne; Barcena, María Ángeles; Cantzler, Hannelore; Crosta, Xavier; Esper, Oliver; Jordan, Richard W.; Kauer, Gerhard; Klaas, Christine; Kloster, Michael; Leventer, Amy; Pike, Jennifer; Rigual Hernández, Andrés S.
    Quantitative comparison of taxa and taxon concepts in the diatom genus Fragilariopsis : A case study on using slide scanning, multiexpert image annotation, and image analysis in taxonomy
    In: Journal of Phycology Vol. 54 (2018) Nr. 5, pp. 703 - 719
    Online Full Text: dx.doi.org/ (Open Access)
  • Ferrario, Martha E.; Almandoz, Gastón O.; Cefarelli, Adrián O.; Beszteri, Bank; Akselman, Rut; Fabro, Elena; Cembella, Allan
    Shionodiscus gaarderae sp. nov. (Thalassiosirales, Thalassiosiraceae), a bloom-producing diatom from the southwestern Atlantic Ocean, and emendation of Shionodiscus bioculatus var. bioculatus
    In: Diatom Research Vol. 33 (2018) Nr. 1, pp. 25 - 37
    Online Full Text: dx.doi.org/
  • Kloster, Michael; Esper, Oliver; Kauer, Gerhard; Beszteri, Bank
    Large-scale permanent slide imaging and image analysis for diatom morphometrics
    In: Applied Sciences Vol. 7 (2017) Nr. 4, pp. 330
    Online Full Text: dx.doi.org/ (Open Access)
  • Stecher, Anique; Neuhaus, Stefan; Lange, Benjamin; Frickenhaus, Stephan; Beszteri, Bank; Kroth, Peter G.; Valentin, Klaus
    rRNA and rDNA based assessment of sea ice protist biodiversity from the central Arctic Ocean
    In: European Journal of Phycology Vol. 51 (2016) Nr. 1, pp. 31 - 46
    Online Full Text: dx.doi.org/ (Open Access)
  • Uhlig, Christiane; Kilpert, Fabian; Frickenhaus, Stephan; Kegel, Jessica U.; Krell, Andreas; Mock, Thomas; Valentin, Klaus; Beszteri, Bank
    In situ expression of eukaryotic ice-binding proteins in microbial communities of Arctic and Antarctic sea ice
    In: ISME Journal Vol. 9 (2015) Nr. 11, pp. 2537 - 2540
    Online Full Text: dx.doi.org/ (Open Access)
  • Buczkó, Krisztina; Wojtal, Agata Z.; Beszteri, Bank; K. Magyari, Enikő
    Morphology and distribution of Navicula schmassmannii and its transfer to genus Humidophila
    In: Studia Botanica Hungarica Vol. 46 (2015) pp. 25 - 41
    Online Full Text: dx.doi.org/
  • Hinz, Friedel; Crawford, Richard M.; Fenner, Juliane; Beszteri, Bank
    Scanning electron microscopic investigation of Vanhoeffenus antarcticus Heiden from type material
    In: Diatom Research Vol. 30 (2015) Nr. 1, pp. 55 - 64
    Online Full Text: dx.doi.org/
  • Pinkernell, Stefan; Beszteri, Bank
    Potential effects of climate change on the distribution range of the main silicate sinker of the Southern Ocean
    In: Ecology and Evolution Vol. 4 (2014) Nr. 16, pp. 3147 - 3161
    Online Full Text: dx.doi.org/ (Open Access)
  • Kloster, Michael; Kauer, Gerhard; Beszteri, Bank
    SHERPA : An image segmentation and outline feature extraction tool for diatoms and other objects
    In: BMC Bioinformatics Vol. 15 (2014) Nr. 1, pp. 218
    Online Full Text: dx.doi.org/ (Open Access)
  • Keeling, Patrick J.; Burki, Fabien; Wilcox, Heather M.; Allam, Bassem; Allen, Eric E.; Amaral-Zettler, Linda A.; Armbrust, E. Virginia; Archibald, John M.; Bharti, Arvind K.; Bell, Callum J.; Beszteri, Bank; Bidle, Kay D.; Cameron, Connor T.; Campbell, Lisa; Caron, David A.; Cattolico, Rose Ann; Collier, Jackie L.; Coyne, Kathryn; Davy, Simon K.; Deschamps, Phillipe; Dyhrman, Sonya T.; Edvardsen, Bente; Gates, Ruth D.; Gobler, Christopher J.; Greenwood, Spencer J.; Guida, Stephanie M.; Jacobi, Jennifer L.; Jakobsen, Kjetill S.; James, Erick R.; Jenkins, Bethany; John, Uwe; Johnson, Matthew D.; Juhl, Andrew R.; Kamp, Anja; Katz, Laura A.; Kiene, Ronald; Kudryavtsev, Alexander; Leander, Brian S.; Lin, Senjie; Lovejoy, Connie; Lynn, Denis; Marchetti, Adrian; McManus, George; Nedelcu, Aurora M.; Menden-Deuer, Susanne; Miceli, Cristina; Mock, Thomas; Montresor, Marina; Moran, Mary Ann; Murray, Shauna; Nadathur, Govind; Nagai, Satoshi; Ngam, Peter B.; Palenik, Brian; Pawlowski, Jan; Petroni, Giulio; Piganeau, Gwenael; Posewitz, Matthew C.; Rengefors, Karin; Romano, Giovanna; Rumpho, Mary E.; Rynearson, Tatiana; Schilling, Kelly B.; Schroeder, Declan C.; Simpson, Alastair G. B.; Slamovits, Claudio H.; Smith, David R.; Smith, G. Jason; Smith, Sarah R.; Sosik, Heidi M.; Stief, Peter; Theriot, Edward; Twary, Scott N.; Umale, Pooja E.; Vaulot, Daniel; Wawrik, Boris; Wheeler, Glen L.; Wilson, William H.; Xu, Yan; Zingone, Adriana; Worden, Alexandra Z.
    The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP) : Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
    In: PLoS Biology Vol. 12 (2014) Nr. 6, e1001889
    Online Full Text: dx.doi.org/ (Open Access)
  • Vergin, Kevin L.; Beszteri, Bank; Monier, Adam; Cameron Thrash, J.; Temperton, Ben; Treusch, Alexander H.; Kilpert, Fabian; Worden, Alexandra Z.; Giovannoni, Stephen J.
    High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences
    In: ISME Journal Vol. 7 (2013) Nr. 7, pp. 1322 - 1332
    Online Full Text: dx.doi.org/ (Open Access)
  • Eichholz, Karsten; Beszteri, Bank; John, Uwe
    Putative Monofunctional Type I Polyketide Synthase Units : A Dinoflagellate-Specific Feature?
    In: PLoS ONE Vol. 7 (2012) Nr. 11, pp. e48624
    Online Full Text: dx.doi.org/ (Open Access)
  • Bertagnolli, Anthony D.; Treusch, Alexander H.; Mason, Olivia U.; Stingl, Ulrich; Vergin, Kevin L.; Chan, Francis T.; Beszteri, Bank; Giovannoni, Stephen J.
    Bacterial diversity in the bottom boundary layer of the inner continental shelf of Oregon, USA
    In: Aquatic Microbial Ecology Vol. 64 (2011) Nr. 1, pp. 15 - 25
    Online Full Text: dx.doi.org/ (Open Access)
  • Alverson, Andrew J.; Beszteri, Bank; Julius, Matthew L.; Theriot, Edward C.
    The model marine diatom Thalassiosira pseudonana likely descended from a freshwater ancestor in the genus Cyclotella
    In: BMC Evolutionary Biology Vol. 11 (2011) Nr. 1, pp. 125
    Online Full Text: dx.doi.org/ (Open Access)
  • Beszteri, Bank; Temperton, Ben; Frickenhaus, Stephan; Giovannoni, Stephen J.
    Average genome size : A potential source of bias in comparative metagenomics
    In: ISME Journal Vol. 4 (2010) Nr. 8, pp. 1075 - 1077
    Online Full Text: dx.doi.org/ (Open Access)
  • Alpermann, Tilman J.; Tillmann, Urban; Beszteri, Bank; Cembella, Allan D.; John, Uwe
    Phenotypic variation and genotypic diversity in a planktonic population of the toxigenic marine dinoflagellate alexandrium tamarense (Dinophyceae)
    In: Journal of Phycology Vol. 46 (2010) Nr. 1, pp. 18 - 32
    Online Full Text: dx.doi.org/ (Open Access)
  • Cock, J. Mark; Sterck, Lieven; Rouzé, Pierre; Scornet, Delphine; Allen, Andrew E.; Amoutzias, Grigoris; Anthouard, Veronique; Artiguenave, François; Aury, Jean-Marc; Badger, Jonathan H.; Beszteri, Bank; Billiau, Kenny; Bonnet, Eric; Bothwell, John H.; Bowler, Chris; Boyen, Catherine; Brownlee, Colin; Carrano, Carl J.; Charrier, Bénédicte; Cho, Ga Youn; Coelho, Susana M.; Collén, Jonas; Corre, Erwan; Da Silva, Corinne; Delage, Ludovic; Delaroque, Nicolas; Dittami, Simon M.; Doulbeau, Sylvie; Elias, Marek; Farnham, Garry; Gachon, Claire M. M.; Gschloessl, Bernhard; Heesch, Svenja; Jabbari, Kamel; Jubin, Claire; Kawai, Hiroshi; Kimura, Kei; Kloareg, Bernard; Küpper, Frithjof C.; Lang, Daniel; Le Bail, Aude; Leblanc, Catherine; Lerouge, Patrice; Lohr, Martin; Lopez, Pascal J.; Martens, Cindy; Maumus, Florian; Michel, Gurvan; Miranda-Saavedra, Diego; Morales, Julia; Moreau, Hervé; Motomura, Taizo; Nagasato, Chikako; Napoli, Carolyn A.; Nelson, David R.; Nyvall-Collén, Pi; Peters, Akira F.; Pommier, Cyril; Potin, Philippe; Poulain, Julie; Quesneville, Hadi; Read, Betsy; Rensing, Stefan A.; Ritter, Andrés; Rousvoal, Sylvie; Samanta, Manoj; Samson, Gaelle; Schroeder, Declan C.; Ségurens, Béatrice; Strittmatter, Martina; Tonon, Thierry; Tregear, James W.; Valentin, Klaus; Von Dassow, Peter; Yamagishi, Takahiro; Van De Peer, Yves; Wincker, Patrick
    The Ectocarpus genome and the independent evolution of multicellularity in brown algae
    In: Nature Vol. 465 (2010) Nr. 7298, pp. 617 - 621
    Online Full Text: dx.doi.org/ (Open Access)
  • Coyer, James A.; Hoarau, Galice Guillaume; Beszteri, Bank; Pearson, Gareth A.; Olsen, Jeanine L.
    Expressed sequence tag-derived polymorphic SSR markers for Fucus serratus and amplification in other species of Fucus
    In: Molecular Ecology Resources Vol. 9 (2009) Nr. 1, pp. 168 - 170
    Online Full Text: dx.doi.org/
  • Moustafa, Ahmed; Beszteri, Bank; Maier, Uwe G.; Bowler, Chris; Valentin, Klaus; Bhattacharya, Debashish
    Genomic footprints of a cryptic plastid endosymbiosis in diatoms
    In: Science Vol. 324 (2009) Nr. 5935, pp. 1724 - 1726
    Online Full Text: dx.doi.org/ (Open Access)
  • Alpermann, Tilman J.; Beszteri, Bank; John, Uwe; Tillmann, Urban; Cembella, Allan D.
    Implications of life-history transitions on the population genetic structure of the toxigenic marine dinoflagellate Alexandrium tamarense
    In: Molecular Ecology Vol. 18 (2009) Nr. 10, pp. 2122 - 2133
    Online Full Text: dx.doi.org/
  • Krell, Andreas; Beszteri, Bank; Dieckmann, Gerhard; Glöckner, Gernot; Valentin, Klaus; Mock, Thomas
    A new class of ice-binding proteins discovered in a salt-stress-induced cDNA library of the psychrophilic diatom Fragilariopsis cylindrus (Bacillariophyceae)
    In: European Journal of Phycology Vol. 43 (2008) Nr. 4, pp. 423 - 433
    Online Full Text: dx.doi.org/ (Open Access)
  • John, Uwe; Beszteri, Bank; Derelle, Evelyne; Van de Peer, Yves; Read, Betsy; Moreau, Hervé; Cembella, Allan
    Novel Insights into Evolution of Protistan Polyketide Synthases through Phylogenomic Analysis
    In: Protist Vol. 159 (2008) Nr. 1, pp. 21 - 30
    Online Full Text: dx.doi.org/
  • Bowler, Chris; Allen, Andrew E.; Badger, Jonathan H.; Grimwood, Jane; Jabbari, Kamel; Kuo, Alan; Maheswari, Uma; Martens, Cindy; Maumus, Florian; Otillar, Robert P.; Rayko, Edda; Salamov, Asaf; Vandepoele, Klaas; Beszteri, Bank; Gruber, Ansgar; Heijde, Marc; Katinka, Michael; Mock, Thomas; Valentin, Klaus; Verret, Fréderic; Berges, John A.; Brownlee, Colin; Cadoret, Jean-Paul; Chiovitti, Anthony; Choi, Chang Jae; Coesel, Sacha; de Martino, Alessandra; Detter, J. Chris; Durkin, Colleen; Falciatore, Angela; Fournet, Jérome; Haruta, Miyoshi; Huysman, Marie J. J.; Jenkins, Bethany D.; Jiroutova, Katerina; Jorgensen, Richard E.; Joubert, Yolaine; Kaplan, Aaron; Kröger, Nils; Kroth, Peter G.; La Roche, Julie; Lindquist, Erica; Lommer, Markus; Martin-Jézéquel, Véronique; Lopez, Pascal J.; Lucas, Susan; Mangogna, Manuela; McGinnis, Karen; Medlin, Linda K.; Montsant, Anton; Secq, Marie-Pierre Oudot-Le; Napoli, Carolyn; Obornik, Miroslav; Parker, Micaela Schnitzler; Petit, Jean-Louis; Porcel, Betina M.; Poulsen, Nicole; Robison, Matthew; Rychlewski, Leszek; Rynearson, Tatiana A.; Schmutz, Jeremy; Shapiro, Harris; Siaut, Magali; Stanley, Michele; Sussman, Michael R.; Taylor, Alison R.; Vardi, Assaf; von Dassow, Peter; Vyverman, Wim; Willis, Anusuya; Wyrwicz, Lucjan S.; Rokhsar, Daniel S.; Weissenbach, Jean; Armbrust, E. Virginia; Green, Beverley R.; Van De Peer, Yves; Grigoriev, Igor V.
    The Phaeodactylum genome reveals the evolutionary history of diatom genomes
    In: Nature Vol. 456 (2008) Nr. 7219, pp. 239 - 244
    Online Full Text: dx.doi.org/ (Open Access)
  • Beszteri, Bank; John, Uwe; Medlin, Linda K.
    An assessment of cryptic genetic diversity within the Cyclotella meneghiniana species complex (Bacillariophyta) based on nuclear and plastid genes, and amplified fragment length polymorphisms
    In: European Journal of Phycology Vol. 42 (2007) Nr. 1, pp. 47 - 60
    Online Full Text: dx.doi.org/ (Open Access)
  • Hanekamp, Kristian; Bohnebeck, Uta; Beszteri, Bank; Valentin, Klaus
    PhyloGena : A user-friendly system for automated phylogenetic annotation of unknown sequences
    In: Bioinformatics Vol. 23 (2007) Nr. 7, pp. 793 - 801
    Online Full Text: dx.doi.org/ (Open Access)
  • Hoppenrath, Mona; Beszteri, Bank; Drebes, Gerhard; Halliger, Hannelore; Van Beusekom, Justus E. E.; Janisch, Silvia; Wiltshire, Karen H.
    Thalassiosira species (Bacillariophyceae, Thalassiosirales) in the North Sea at Helgoland (German Bight) and Sylt (North Frisian Wadden Sea) : A first approach to assessing diversity
    In: European Journal of Phycology Vol. 42 (2007) Nr. 3, pp. 271 - 288
    Online Full Text: dx.doi.org/ (Open Access)
  • Beszteri, Bank; Ács, Éva; Medlin, Linda
    Conventional and geometric morphometric studies of valve ultrastructural variation in two closely related cyclotella species (bacillariophyta)
    In: European Journal of Phycology Vol. 40 (2005) Nr. 1, pp. 89 - 103
    Online Full Text: dx.doi.org/ (Open Access)
  • Beszteri, Bank; Ács, Éva; Medlin, Linda K.
    Ribosomal DNA sequence variation among sympatric strains of the Cyclotella meneghiniana complex (Bacillariophyceae) reveals cryptic diversity
    In: Protist Vol. 156 (2005) Nr. 3, pp. 317 - 333
    Online Full Text: dx.doi.org/
  • John, Uwe; Groben, René; Beszteri, Bank; Medlin, Linda
    Utility of Amplified Fragment Length Polymorphisms (AFLP) to analyse genetic structures within the Alexandrium tamarense species complex
    In: Protist Vol. 155 (2004) Nr. 2, pp. 169 - 179
    Online Full Text: dx.doi.org/
  • Borsodi, Andrea K.; Vladár, Péter; Cech, Gábor; Gedeon, Gábor; Beszteri, Bank; Micsinai, Adrienn; Reskóné, Mária N.; Márialigeti, Károly
    Bacterial activities in the sediment of Lake Velencei, Hungary
    In: Hydrobiologia Vol. 506 (2003) pp. 721 - 728
    Online Full Text: dx.doi.org/
  • Egyed, Zsuzsanna; Sréter, Tamáks; Széll, Zoltán; Beszteri, Bank; Dobos-Kovács, Mihály; Márialigeti, Károly; Cornelissen, Albert W.C.A.; Varga, István
    Polyphasic typing of Cryptosporidium baileyi : A suggested model for characterization of cryptosporidia
    In: The Journal of Parasitology Vol. 88 (2002) Nr. 2, pp. 237 - 243
    Online Full Text: dx.doi.org/
  • Egyed, Zsuzsanna; Sréter, Tamáks; Széll, Zoltán; Beszteri, Bank; Oravecz, Orsolya; Márialigeti, Károly; Varga, István
    Morphologic and genetic characterization of Onchocerca lupi infecting dogs
    In: Veterinary Parasitology Vol. 102 (2001) Nr. 4, pp. 309 - 319
    Online Full Text: dx.doi.org/
  • Beszteri, Bank; Ács, Éva; Makk, Judit; Kovács, Gábor M.; Márialigeti, K.; Kiss, Keve Tihamér
    Phylogeny of six naviculoid diatoms based on 18S rDNA sequences
    In: International Journal of Systematic and Evolutionary Microbiology (IJSEM) Vol. 51 (2001) Nr. 4, pp. 1581 - 1586
    Online Full Text: dx.doi.org/ (Open Access)

    • Preprints

  • Mayombo, Ntambwe Albert Serge; Haverbeck, Lisa; Dani, Mimoza; Kloster, Michael; Vidakovic, Danijela; Beszteri, Bank; Burfeid-Castellanos, Andrea M.
    Characterization of diatom communities in restored sewage channels in the Boye catchment, Germany
    (2024)
    Online Full Text: dx.doi.org/ (Open Access)

Dr. Andrea Burfeid Castellanos

Fakultät für Biologie / Phykologie

Address
Universitätsstr 2
45141 Essen
Room
S05 V05 E35
Phone
+49 (0) 201 183 4513
E-Mail
andrea.burfeid-castellanos@uni-due.de
Website
https://www.uni-due.de/phykologie
Office hours
nach Absprache

Functions

  • Wissenschaftliche/r Mitarbeiter/in, Phykologie


    Room
    S05 V05 F24

The following publications are listed in the online university bibliography of the University of Duisburg-Essen. Further information may also be found on the person's personal web pages.

    Journal articles

  • Madge Pimentel, Iris; Baikova, Daria; Buchner, Dominik; Burfeid Castellanos, Andrea; David, Gwendoline M.; Deep, Aman; Doliwa, Annemie; Hadžiomerović, Una; Mayombo, Ntambwe Albert Serge; Prati, Sebastian; Spyra, Marzena; Vermiert, Anna-Maria; Beisser, Daniela; Dunthorn, Micah; Piggott, Jeremy J.; Sures, Bernd; Tiegs, Scott D.; Leese, Florian; Beermann, Arne
    Assessing the response of an urban stream ecosystem to salinization under different flow regimes
    In: Science of the Total Environment Vol. 926 (2024) 171849
    Online Full Text: dx.doi.org/ (Open Access)
  • Vidakovic, Danijela; Mayombo, Ntambwe Albert Serge; Burfeid Castellanos, Andrea; Kloster, Michael; Beszteri, Bank
    Assessment of the ecological status of large lowland rivers (Sava and Tisa, Serbia) based on digital microscopic investigation of the diatom communities
    In: Diatom Research Vol. 38 (2024) Nr. 4, pp. 229 - 244
    Online Full Text: dx.doi.org/
  • Vidakovic, Danijela; Mayombo, Ntambwe Albert Serge; Burfeid Castellanos, Andrea; Kloster, Michael; Beszteri, Bank
    Diatom metabarcoding as a tool to assess the water quality of two large tributaries of the Danube River
    In: Ecological Indicators Vol. 168 (2024) 112793
    Online Full Text: dx.doi.org/ (Open Access)
  • Kaijser, Willem; Lorenz, Armin; Brauer, Verena; Burfeid Castellanos, Andrea; David, Gwendoline M.; Nuy, Julia; Baikova, Daria; Beszteri, Bank; Gillmann, Svenja M.; Kiesel, Jens; Mayombo, Ntambwe Albert Serge; Peters, Kristin; Rettig, Katharina; Rolauffs, Peter; Haase, Peter; Hering, Daniel
    Differential associations of five riverine organism groups with multiple stressors
    In: Science of the Total Environment Vol. 934 (2024) 173105
    Online Full Text: dx.doi.org/ (Open Access)
  • Mayombo, Ntambwe Albert Serge; Burfeid-Castellanos, Andrea M.; Vermiert, Anna-Maria; Madge Pimentel, Iris; Rehsen, Philipp M.; Dani, Mimoza; Jasinski, Christina; Spyra, Marzena Agata; Kloster, Michael; Vidakovic, Danijela; Buchner, Dominik; Beszteri, Bank
    Functional and compositional responses of stream microphytobenthic communities to multiple stressors increase and release in a mesocosm experiment
    In: Science of the Total Environment Vol. 943 (2024) 173670
    Online Full Text: dx.doi.org/ (Open Access)
  • Farias, Luan; Beszteri, Bank; Burfeid Castellanos, Andrea M.; Doliwa, Annemie; Enss, Julian; Feld, Christian K.; Grabner, Daniel; Lampert, Kathrin P.; Mayombo, Ntambwe A. Serge; Prati, Sebastian; Schürings, Christian; Smollich, Esther; Schäfer, Ralf B.; Sures, Bernd; Le, T.T. Yen
    Influence of salinity on the thermal tolerance of aquatic organisms
    In: Science of the Total Environment Vol. 953 (2024) 176120
    Online Full Text: dx.doi.org/ (Open Access)
  • Burfeid Castellanos, Andrea M.; Mones, Phillip; Dani, Mimoza; Beszteri, Bánk
    Non-perennial rivers and streams in extreme hydrological conditions : Comparing the effectiveness of amplicon sequencing and digital microscopy for diatom biodiversity appraisal
    In: Frontiers in Ecology and Evolution Vol. 12 (2024) 1355018
    Online Full Text: dx.doi.org/ Online Full Text (Open Access)
  • Venkataramanan, Aishwarya; Kloster, Michael; Burfeid-Castellanos, Andrea; Dani, Mimoza; Mayombo, Ntambwe A. S; Vidakovic, Danijela; Langenkämper, Daniel; Tan, Mingkun; Pradalier, Cedric; Nattkemper, Tim; Laviale, Martin; Beszteri, Bánk
    “UDE DIATOMS in the Wild 2024” : A new image dataset of freshwater diatoms for training deep learning models
    In: GigaScience Vol. 13 (2024) giae087
    Online Full Text: dx.doi.org/ (Open Access)
  • Kloster, Michael; Burfeid-Castellanos, Andrea M.; Langenkämper, Daniel; Nattkemper, Tim W.; Beszteri, Bank
    Improving deep learning-based segmentation of diatoms in gigapixel-sized virtual slides by object-based tile positioning and object integrity constraint
    In: PLoS ONE Vol. 18 (2023) Nr. 2, e0272103
    Online Full Text: dx.doi.org/ (Open Access)
  • Vos, Matthijs; Hering, Daniel; Gessner, Mark O.; Leese, Florian; Schäfer, Ralf B.; Tollrian, Ralph; Boenigk, Jens; Haase, Peter; Meckenstock, Rainer; Baikova, Daria; Bayat, Helena; Beermann, Arne; Beißer, Daniela; Beszteri, Bánk; Birk, Sebastian; Boden, Lisa; Brauer, Verena; Brauns, Mario; Buchner, Dominik; Burfeid-Castellanos, Andrea; David, Gwendoline; Deep, Aman; Doliwa, Annemie; Dunthorn, Micah; Enß, Julian; Escobar-Sierra, Camilo; Feld, Christian K.; Fohrer, Nicola; Grabner, Daniel; Hadziomerovic, Una; Jähnig, Sonja C.; Jochmann, Maik; Khaliq, Shaista; Kiesel, Jens; Kuppels, Annabel; Lampert, Kathrin P.; Le, T.T. Yen; Lorenz, Armin W.; Madariaga, Graciela Medina; Meyer, Benjamin; Pantel, Jelena H.; Pimentel, Iris Madge; Mayombo, Ntambwe Serge; Nguyen, Hong Hanh; Peters, Kristin; Pfeifer, Svenja M.; Prati, Sebastian; Probst, Alexander J.; Reiner, Dominik; Rolauffs, Peter; Schlenker, Alexandra; Schmidt, Torsten C.; Shah, Mana; Sieber, Guido; Stach, Tom Lennard; Tielke, Ann-Kathrin; Vermiert, Anna-Maria; Weiss, Martina; Weitere, Markus; Sures, Bernd
    The Asymmetric Response Concept explains ecological consequences of multiple stressor exposure and release
    In: Science of the Total Environment Vol. 872 (2023) 162196
    Online Full Text: dx.doi.org/
  • Burfeid-Castellanos, Andrea M.; Kloster, Michael; Beszteri, Sara; Postel, Ute; Spyra, Marzena; Zurowietz, Martin; Nattkemper, Tim W.; Beszteri, Bank
    A Digital Light Microscopic Method for Diatom Surveys Using Embedded Acid-Cleaned Samples
    In: Water Vol. 14 (2022) Nr. 20, 3332
    Online Full Text: dx.doi.org/ (Open Access)
  • Burfeid-Castellanos, Andrea M.; Martín-Martín, Rafael P.; Kloster, Michael; Angulo-Preckler, Carlos; Avila, Conxita; Beszteri, Bank
    Epiphytic diatom community structure and richness is determined by macroalgal host and location in the South Shetland Islands (Antarctica)
    In: PLoS ONE Vol. 16 (2021) Nr. 4, pp. e0250629
    Online Full Text: dx.doi.org/ Online Full Text (Open Access)

Dr. Michael Kloster

Fakultät für Biologie / Phykologie

Address
Universitätsstr. 2
45141 Essen
Room
S05 V05 E35
Phone
+49 (0) 201 183 4513
E-Mail
michael.kloster@uni-due.de
Website
https://www.uni-due.de/phykologie

Functions

  • Wissenschaftliche/r Mitarbeiter/in, Phykologie

The following publications are listed in the online university bibliography of the University of Duisburg-Essen. Further information may also be found on the person's personal web pages.

    Journal articles

  • Mayombo, Ntambwe Albert Serge; Dani, Mimoza; Kloster, Michael; Vidakovic, Danijela; Buchner, Dominik; Burfeid-Castellanos, Andrea M.; Beszteri, Bank
    Assessment of microphytobenthos communities in the Kinzig catchment using photosynthesis-related traits, digital light microscopy and 18S-V9 amplicon sequencing
    In: Frontiers in Ecology and Evolution Vol. 12 (2024) 1422925
    Online Full Text: dx.doi.org/ (Open Access)
  • Vidakovic, Danijela; Mayombo, Ntambwe Albert Serge; Burfeid Castellanos, Andrea; Kloster, Michael; Beszteri, Bank
    Assessment of the ecological status of large lowland rivers (Sava and Tisa, Serbia) based on digital microscopic investigation of the diatom communities
    In: Diatom Research Vol. 38 (2024) Nr. 4, pp. 229 - 244
    Online Full Text: dx.doi.org/
  • Vidakovic, Danijela; Mayombo, Ntambwe Albert Serge; Burfeid Castellanos, Andrea; Kloster, Michael; Beszteri, Bank
    Diatom metabarcoding as a tool to assess the water quality of two large tributaries of the Danube River
    In: Ecological Indicators Vol. 168 (2024) 112793
    Online Full Text: dx.doi.org/ (Open Access)
  • Mayombo, Ntambwe Albert Serge; Burfeid-Castellanos, Andrea M.; Vermiert, Anna-Maria; Madge Pimentel, Iris; Rehsen, Philipp M.; Dani, Mimoza; Jasinski, Christina; Spyra, Marzena Agata; Kloster, Michael; Vidakovic, Danijela; Buchner, Dominik; Beszteri, Bank
    Functional and compositional responses of stream microphytobenthic communities to multiple stressors increase and release in a mesocosm experiment
    In: Science of the Total Environment Vol. 943 (2024) 173670
    Online Full Text: dx.doi.org/ (Open Access)
  • Venkataramanan, Aishwarya; Kloster, Michael; Burfeid-Castellanos, Andrea; Dani, Mimoza; Mayombo, Ntambwe A. S; Vidakovic, Danijela; Langenkämper, Daniel; Tan, Mingkun; Pradalier, Cedric; Nattkemper, Tim; Laviale, Martin; Beszteri, Bánk
    “UDE DIATOMS in the Wild 2024” : A new image dataset of freshwater diatoms for training deep learning models
    In: GigaScience Vol. 13 (2024) giae087
    Online Full Text: dx.doi.org/ (Open Access)
  • Kloster, Michael; Burfeid-Castellanos, Andrea M.; Langenkämper, Daniel; Nattkemper, Tim W.; Beszteri, Bank
    Improving deep learning-based segmentation of diatoms in gigapixel-sized virtual slides by object-based tile positioning and object integrity constraint
    In: PLoS ONE Vol. 18 (2023) Nr. 2, e0272103
    Online Full Text: dx.doi.org/ (Open Access)
  • Kloster, Michael; Beszteri, Bank
    Virtuelle digitale Lichtmikroskopie in der Lehre : Mit UDE BioSLiDES im Webbrowser die große Welt der kleinen Dinge erkunden
    In: Biologie in unserer Zeit Vol. 53 (2023) Nr. 2, pp. 164 - 171
    Online Full Text: dx.doi.org/ (Open Access)
  • Burfeid-Castellanos, Andrea M.; Kloster, Michael; Beszteri, Sara; Postel, Ute; Spyra, Marzena; Zurowietz, Martin; Nattkemper, Tim W.; Beszteri, Bank
    A Digital Light Microscopic Method for Diatom Surveys Using Embedded Acid-Cleaned Samples
    In: Water Vol. 14 (2022) Nr. 20, 3332
    Online Full Text: dx.doi.org/ (Open Access)
  • Monsees, Indra; Turzynski, Victoria; Esser, Sarah P.; Soares, Andre; Timmermann, Lara I.; Weidenbach, Katrin; Banas, Jarno; Kloster, Michael; Beszteri, Bank; Schmitz, Ruth A.; Probst, Alexander J.
    Erratum for Monsees et al., “Label-Free Raman Microspectroscopy for Identifying Prokaryotic Virocells”
    In: mSystems Vol. 7 (2022) Nr. 2, e00162-22
    Online Full Text: dx.doi.org/ (Open Access)
  • Monsees, Indra; Turzynski, Victoria; Esser, Sarah P.; Soares, André; Timmermann, Lara I.; Weidenbach, Katrin; Banas, Jarno; Kloster, Michael; Beszteri, Bank; Schmitz, Ruth A.; Probst, Alexander J.
    Label-Free Raman Microspectroscopy for Identifying Prokaryotic Virocells
    In: mSystems Vol. 7 (2022) Nr. 1, e01505-21
    Online Full Text: dx.doi.org/ (Open Access)
  • Burfeid-Castellanos, Andrea M.; Martín-Martín, Rafael P.; Kloster, Michael; Angulo-Preckler, Carlos; Avila, Conxita; Beszteri, Bank
    Epiphytic diatom community structure and richness is determined by macroalgal host and location in the South Shetland Islands (Antarctica)
    In: PLoS ONE Vol. 16 (2021) Nr. 4, pp. e0250629
    Online Full Text: dx.doi.org/ Online Full Text (Open Access)
  • Burfeid-Castellanos, Andrea M.; Kloster, Michael; Cambra, Jaume; Beszteri, Bank
    Both hydrology and physicochemistry influence diatom morphometry
    In: Diatom Research Vol. 35 (2020) Nr. 4, pp. 315 - 326
    Online Full Text: dx.doi.org/
  • Kloster, Michael; Langenkämper, Daniel; Zurowietz, Martin; Beszteri, Bank; Nattkemper, Tim W.
    Deep learning-based diatom taxonomy on virtual slides
    In: Scientific Reports Vol. 10 (2020) Nr. 1, pp. 14416
    Online Full Text: dx.doi.org/ Online Full Text (Open Access)
  • Kloster, Michael; Kauer, Gerhard; Esper, Oliver; Fuchs, Nike; Beszteri, Bank
    Morphometry of the diatom Fragilariopsis kerguelensis from Southern Ocean sediment : High-throughput measurements show second morphotype occurring during glacials
    In: Marine Micropaleontology Vol. 143 (2018) pp. 70 - 79
    Online Full Text: dx.doi.org/ (Open Access)
  • Beszteri, Bank; Allen, Claire; Almandoz, Gastón O.; Armand, Leanne; Barcena, María Ángeles; Cantzler, Hannelore; Crosta, Xavier; Esper, Oliver; Jordan, Richard W.; Kauer, Gerhard; Klaas, Christine; Kloster, Michael; Leventer, Amy; Pike, Jennifer; Rigual Hernández, Andrés S.
    Quantitative comparison of taxa and taxon concepts in the diatom genus Fragilariopsis : A case study on using slide scanning, multiexpert image annotation, and image analysis in taxonomy
    In: Journal of Phycology Vol. 54 (2018) Nr. 5, pp. 703 - 719
    Online Full Text: dx.doi.org/ (Open Access)
  • Kloster, Michael; Esper, Oliver; Kauer, Gerhard; Beszteri, Bank
    Large-scale permanent slide imaging and image analysis for diatom morphometrics
    In: Applied Sciences Vol. 7 (2017) Nr. 4, pp. 330
    Online Full Text: dx.doi.org/ (Open Access)
  • Kloster, Michael; Kauer, Gerhard; Beszteri, Bank
    SHERPA : An image segmentation and outline feature extraction tool for diatoms and other objects
    In: BMC Bioinformatics Vol. 15 (2014) Nr. 1, pp. 218
    Online Full Text: dx.doi.org/ (Open Access)

    • Preprints

  • Mayombo, Ntambwe Albert Serge; Haverbeck, Lisa; Dani, Mimoza; Kloster, Michael; Vidakovic, Danijela; Beszteri, Bank; Burfeid-Castellanos, Andrea M.
    Characterization of diatom communities in restored sewage channels in the Boye catchment, Germany
    (2024)
    Online Full Text: dx.doi.org/ (Open Access)

Ntambwe Albert Serge Mayombo

Fakultät für Biologie / Phykologie

Address
Universitätsstr 2
45117 Essen
Room
S05 R02 H80
Phone
+49 (0) 201 183 4748
E-Mail
ntambwe.mayombo@uni-due.de
Website
https://www.uni-due.de/phycology/team.php

Functions

  • Doktorand/in, Phykologie

Current lectures

No current lectures.

Past lectures (max. 10)

No past lectures.

The following publications are listed in the online university bibliography of the University of Duisburg-Essen. Further information may also be found on the person's personal web pages.

    Journal articles

  • Madge Pimentel, Iris; Baikova, Daria; Buchner, Dominik; Burfeid Castellanos, Andrea; David, Gwendoline M.; Deep, Aman; Doliwa, Annemie; Hadžiomerović, Una; Mayombo, Ntambwe Albert Serge; Prati, Sebastian; Spyra, Marzena; Vermiert, Anna-Maria; Beisser, Daniela; Dunthorn, Micah; Piggott, Jeremy J.; Sures, Bernd; Tiegs, Scott D.; Leese, Florian; Beermann, Arne
    Assessing the response of an urban stream ecosystem to salinization under different flow regimes
    In: Science of the Total Environment Vol. 926 (2024) 171849
    Online Full Text: dx.doi.org/ (Open Access)
  • Mayombo, Ntambwe Albert Serge; Dani, Mimoza; Kloster, Michael; Vidakovic, Danijela; Buchner, Dominik; Burfeid-Castellanos, Andrea M.; Beszteri, Bank
    Assessment of microphytobenthos communities in the Kinzig catchment using photosynthesis-related traits, digital light microscopy and 18S-V9 amplicon sequencing
    In: Frontiers in Ecology and Evolution Vol. 12 (2024) 1422925
    Online Full Text: dx.doi.org/ (Open Access)
  • Vidakovic, Danijela; Mayombo, Ntambwe Albert Serge; Burfeid Castellanos, Andrea; Kloster, Michael; Beszteri, Bank
    Assessment of the ecological status of large lowland rivers (Sava and Tisa, Serbia) based on digital microscopic investigation of the diatom communities
    In: Diatom Research Vol. 38 (2024) Nr. 4, pp. 229 - 244
    Online Full Text: dx.doi.org/
  • Vidakovic, Danijela; Mayombo, Ntambwe Albert Serge; Burfeid Castellanos, Andrea; Kloster, Michael; Beszteri, Bank
    Diatom metabarcoding as a tool to assess the water quality of two large tributaries of the Danube River
    In: Ecological Indicators Vol. 168 (2024) 112793
    Online Full Text: dx.doi.org/ (Open Access)
  • Kaijser, Willem; Lorenz, Armin; Brauer, Verena; Burfeid Castellanos, Andrea; David, Gwendoline M.; Nuy, Julia; Baikova, Daria; Beszteri, Bank; Gillmann, Svenja M.; Kiesel, Jens; Mayombo, Ntambwe Albert Serge; Peters, Kristin; Rettig, Katharina; Rolauffs, Peter; Haase, Peter; Hering, Daniel
    Differential associations of five riverine organism groups with multiple stressors
    In: Science of the Total Environment Vol. 934 (2024) 173105
    Online Full Text: dx.doi.org/ (Open Access)
  • Mayombo, Ntambwe Albert Serge; Burfeid-Castellanos, Andrea M.; Vermiert, Anna-Maria; Madge Pimentel, Iris; Rehsen, Philipp M.; Dani, Mimoza; Jasinski, Christina; Spyra, Marzena Agata; Kloster, Michael; Vidakovic, Danijela; Buchner, Dominik; Beszteri, Bank
    Functional and compositional responses of stream microphytobenthic communities to multiple stressors increase and release in a mesocosm experiment
    In: Science of the Total Environment Vol. 943 (2024) 173670
    Online Full Text: dx.doi.org/ (Open Access)
  • Farias, Luan; Beszteri, Bank; Burfeid Castellanos, Andrea M.; Doliwa, Annemie; Enss, Julian; Feld, Christian K.; Grabner, Daniel; Lampert, Kathrin P.; Mayombo, Ntambwe A. Serge; Prati, Sebastian; Schürings, Christian; Smollich, Esther; Schäfer, Ralf B.; Sures, Bernd; Le, T.T. Yen
    Influence of salinity on the thermal tolerance of aquatic organisms
    In: Science of the Total Environment Vol. 953 (2024) 176120
    Online Full Text: dx.doi.org/ (Open Access)
  • Venkataramanan, Aishwarya; Kloster, Michael; Burfeid-Castellanos, Andrea; Dani, Mimoza; Mayombo, Ntambwe A. S; Vidakovic, Danijela; Langenkämper, Daniel; Tan, Mingkun; Pradalier, Cedric; Nattkemper, Tim; Laviale, Martin; Beszteri, Bánk
    “UDE DIATOMS in the Wild 2024” : A new image dataset of freshwater diatoms for training deep learning models
    In: GigaScience Vol. 13 (2024) giae087
    Online Full Text: dx.doi.org/ (Open Access)
  • Le, T. T. Yen; Becker, Alina; Kleinschmidt, Jana; Mayombo, Ntambwe Albert Serge; Farias, Luan; Beszteri, Sara; Beszteri, Bank
    Revealing Interactions between Temperature and Salinity and Their Effects on the Growth of Freshwater Diatoms by Empirical Modelling
    In: Phycology Vol. 3 (2023) Nr. 4, pp. 413 - 435
    Online Full Text: dx.doi.org/ (Open Access)
  • Vos, Matthijs; Hering, Daniel; Gessner, Mark O.; Leese, Florian; Schäfer, Ralf B.; Tollrian, Ralph; Boenigk, Jens; Haase, Peter; Meckenstock, Rainer; Baikova, Daria; Bayat, Helena; Beermann, Arne; Beißer, Daniela; Beszteri, Bánk; Birk, Sebastian; Boden, Lisa; Brauer, Verena; Brauns, Mario; Buchner, Dominik; Burfeid-Castellanos, Andrea; David, Gwendoline; Deep, Aman; Doliwa, Annemie; Dunthorn, Micah; Enß, Julian; Escobar-Sierra, Camilo; Feld, Christian K.; Fohrer, Nicola; Grabner, Daniel; Hadziomerovic, Una; Jähnig, Sonja C.; Jochmann, Maik; Khaliq, Shaista; Kiesel, Jens; Kuppels, Annabel; Lampert, Kathrin P.; Le, T.T. Yen; Lorenz, Armin W.; Madariaga, Graciela Medina; Meyer, Benjamin; Pantel, Jelena H.; Pimentel, Iris Madge; Mayombo, Ntambwe Serge; Nguyen, Hong Hanh; Peters, Kristin; Pfeifer, Svenja M.; Prati, Sebastian; Probst, Alexander J.; Reiner, Dominik; Rolauffs, Peter; Schlenker, Alexandra; Schmidt, Torsten C.; Shah, Mana; Sieber, Guido; Stach, Tom Lennard; Tielke, Ann-Kathrin; Vermiert, Anna-Maria; Weiss, Martina; Weitere, Markus; Sures, Bernd
    The Asymmetric Response Concept explains ecological consequences of multiple stressor exposure and release
    In: Science of the Total Environment Vol. 872 (2023) 162196
    Online Full Text: dx.doi.org/
  • Majewska, Roksana; Mayombo, Ntambwe Albert Serge; Smit, Albertus J.; Goosen, William E.
    New observations on the diatom genus Druehlago (Bacillariophyta) and description of two new species from South Africa
    In: Phycologia Vol. 61 (2022) Nr. 1, pp. 75 - 88
    Online Full Text: dx.doi.org/

    • Preprints

  • Mayombo, Ntambwe Albert Serge; Haverbeck, Lisa; Dani, Mimoza; Kloster, Michael; Vidakovic, Danijela; Beszteri, Bank; Burfeid-Castellanos, Andrea M.
    Characterization of diatom communities in restored sewage channels in the Boye catchment, Germany
    (2024)
    Online Full Text: dx.doi.org/ (Open Access)

    • Thesis

  • Mayombo, Ntambwe Albert Serge;
    Functional and compositional responses of stream microphytobenthic communities to multiple stressors increase and decrease
    Duisburg, Essen (2024) iv, 137 Seiten
    Online Full Text: dx.doi.org/ Online Full Text (Open Access)

Dina Abdelmguid

Fak. Biologie, Phykologie

Address
Universitätsstr 2
45117 Essen
Room
S05 V05 F24
Phone
+49 201 183 4748
E-Mail
dina.Abdelmguid@uni-due.de

Functions

  • Doktorand/in, Phykologie

Current lectures

No current lectures.

Past lectures (max. 10)

No past lectures.

Danijela Vidakovic

Address
Universitätsstr 2
45117 Essen
Room
S05 V05 F24
Phone
0201 183 4748
E-Mail
danijela.vidakovic@uni-due.de

Functions

  • Doktorand/in, Phykologie

The following publications are listed in the online university bibliography of the University of Duisburg-Essen. Further information may also be found on the person's personal web pages.

    Journal articles

  • Mayombo, Ntambwe Albert Serge; Dani, Mimoza; Kloster, Michael; Vidakovic, Danijela; Buchner, Dominik; Burfeid-Castellanos, Andrea M.; Beszteri, Bank
    Assessment of microphytobenthos communities in the Kinzig catchment using photosynthesis-related traits, digital light microscopy and 18S-V9 amplicon sequencing
    In: Frontiers in Ecology and Evolution Vol. 12 (2024) 1422925
    Online Full Text: dx.doi.org/ (Open Access)
  • Vidakovic, Danijela; Mayombo, Ntambwe Albert Serge; Burfeid Castellanos, Andrea; Kloster, Michael; Beszteri, Bank
    Assessment of the ecological status of large lowland rivers (Sava and Tisa, Serbia) based on digital microscopic investigation of the diatom communities
    In: Diatom Research Vol. 38 (2024) Nr. 4, pp. 229 - 244
    Online Full Text: dx.doi.org/
  • Vidakovic, Danijela; Dimkić, Ivica; Krizmanić, Jelena; Janakiev, Tamara; Gavrilović, Bojan; Ćirić, Miloš
    Diatom and Bacterial Communities in Saline Habitats (Vojvodina, Serbia)
    In: Wetlands: Journal of the Society of Wetland Scientists Vol. 44 (2024) Nr. 5, 55
    Online Full Text: dx.doi.org/
  • Vidakovic, Danijela; Mayombo, Ntambwe Albert Serge; Burfeid Castellanos, Andrea; Kloster, Michael; Beszteri, Bank
    Diatom metabarcoding as a tool to assess the water quality of two large tributaries of the Danube River
    In: Ecological Indicators Vol. 168 (2024) 112793
    Online Full Text: dx.doi.org/ (Open Access)
  • Mayombo, Ntambwe Albert Serge; Burfeid-Castellanos, Andrea M.; Vermiert, Anna-Maria; Madge Pimentel, Iris; Rehsen, Philipp M.; Dani, Mimoza; Jasinski, Christina; Spyra, Marzena Agata; Kloster, Michael; Vidakovic, Danijela; Buchner, Dominik; Beszteri, Bank
    Functional and compositional responses of stream microphytobenthic communities to multiple stressors increase and release in a mesocosm experiment
    In: Science of the Total Environment Vol. 943 (2024) 173670
    Online Full Text: dx.doi.org/ (Open Access)
  • Gavrilović, Bojan; Vidakovic, Danijela; Marković, Aleksandra; Ćirić, Miloš
    Zooplankton community (Rotifera and Crustacea) and population dynamics of Arctodiaptomus spinosus in Lake Rusanda (Serbia)
    In: Wetlands Ecology and Management Vol. 32 (2024) Nr. 3, pp. 355 - 365
    Online Full Text: dx.doi.org/
  • Venkataramanan, Aishwarya; Kloster, Michael; Burfeid-Castellanos, Andrea; Dani, Mimoza; Mayombo, Ntambwe A. S; Vidakovic, Danijela; Langenkämper, Daniel; Tan, Mingkun; Pradalier, Cedric; Nattkemper, Tim; Laviale, Martin; Beszteri, Bánk
    “UDE DIATOMS in the Wild 2024” : A new image dataset of freshwater diatoms for training deep learning models
    In: GigaScience Vol. 13 (2024) giae087
    Online Full Text: dx.doi.org/ (Open Access)
  • Vidakovic, Danijela; Levkov, Zlatko; Krizmanić, Jelena; Beszteri, Bank; Gavrilović, Bojan; Ćirić, Miloš
    A new small-celled naviculoid diatom species, Mayamaea pannonica sp. nov. (Bacillariophyceae) from soda pans in Serbia
    In: Phycologia Vol. 62 (2023) Nr. 3, pp. 268 - 276
    Online Full Text: dx.doi.org/

    • Preprints

  • Mayombo, Ntambwe Albert Serge; Haverbeck, Lisa; Dani, Mimoza; Kloster, Michael; Vidakovic, Danijela; Beszteri, Bank; Burfeid-Castellanos, Andrea M.
    Characterization of diatom communities in restored sewage channels in the Boye catchment, Germany
    (2024)
    Online Full Text: dx.doi.org/ (Open Access)

Kay Eibl

Fakultät für Biologie - Zentralsekretariat

Address
Universitätsstr 2
45117 Essen
Room
S03 S03 A29
Phone
+49 (0) 201 183 4374
Fax
+49 (0) 201 183 3768
E-Mail
kay.eibl@uni-due.de

Functions

  • Sekretär/in, Phykologie

  • Sekretär/in, Bioinformatik and Computational Biophysics

Marzena Spyra

Fakultät für Biologie / Phykologie

Address
Universitätsstr. 2
45141 Essen
Room
S05 V05 F23
Phone
+49 (0) 201 183 3790
E-Mail
marzena.spyra@uni-due.de

Functions

  • Technische/r Mitarbeiter/in, Phykologie

Alumni

Dr. Danijela Vidakovic (Humboldt visiting scientist 2022-23) - ORCID

Dr. Lubomir Rajter (Humboldt visiting scientist 2022) - ORCID

Dr. Ute Postel (DFG postdoc 2019-2021)