CRC 1093 - Publications Project A6
Area A: Chemical Ligands and Method
Publications by Prof. B. Saccà
Project A6:
DNA-based nanocontainers for predesigned spatial confinement of proteins
J. Huang, S. Gambietz, B. Saccà: Self-Assembled Artificial DNA Nanocompartments and Their Bioapplications. Small 2022 Jul 1;e2202253. doi: 10.1002/smll.202202253
R. Kosinski, J. Mieres Perez, E.-C. Schöneweiß, Y. B. Ruiz-Blanco, I. Ponzo, K. Bravo-Rodriguez, M. Erkelenz, S. Schlücker, G. Uhlenbrock, E. Sanchez-Garcia , B. Saccà: The role of DNA nanostructures in the catalytic properties of an allosterically regulated protease. Sci Adv 2022 Jan 7; 8(1): eabk0425. doi: 10.1126/sciadv.abk0425.
M. Erkelenz, R. Kosinski, O. Sritharan, H. Giesler, B. Saccà , S. Schlücker : Site-specific facet protection of gold nanoparticles inside a 3D DNA origami box: a tool for molecular plasmonics. Chem Commun (Camb). 2021 Feb 26. doi: 10.1039/d0cc07712g.
A. Jaekel, P. Stegemann, B. Saccà: Manipulating Enzymes Properties with DNA Nanostructures. Molecules 2019, 24(20), 3694; https://doi.org/10.3390/molecules24203694
R. Kosinski, A. Mukhortava, W. Pfeifer, A. Candelli, P. Rauch, B. Saccà: Sites of high local frustration in DNA origami. Nat Commun. 2019 Mar 5;10(1):1061. doi: 10.1038/s41467-019-09002-6.
W. Pfeifer, P. Lill, C. Gatsogiannis, B. Saccà: Hierarchical Assembly of DNA Filaments with Designer Elastic Properties. ACS Nano. 2017 Nov 21. doi: 10.1021/acsnano.7b06012.
A. Sprengel, P. Lill, P. Stegemann, K. Bravo-Rodriguez, E.-C. Schöneweiß, M. Merdanovic, D. Gudnason, M. Aznauryan, L. Gamrad, S. Barcikowski, E. Sanchez-Garcia , V. Birkedal, C. Gatsogiannis, M. Ehrmann , B. Saccà: Tailored protein encapsulation into a DNA host using geometrically organized supramolecular interactions. Nat. Comm. 2017. doi: 10.1038/ncomms14472
E.-C. Schöneweiß, B. Saccà: The collective behavior of spring-like motifs tethered to a DNA origami nanostructure. Nanoscale. 2017, 9, 4486
B. Saccà, Y. Ishitsuka, R. Meyer, A. Sprengel, E.C. Schöneweiß, G.U. Nienhaus, C.M. Niemeyer: Reversible Reconfiguration of DNA Origami Nanochambers Monitored by Single-Molecule FRET. Angew Chem Int Ed Engl. 2015 Jan 28.
R. Meyer, B. Saccà, C.M. Niemeyer: Site-directed, on-surface assembly of DNA nanostructures. Angew Chem Int Ed Engl. 2015 Oct 5;54(41):12039-43. doi: 10.1002/anie.201505553.
B. Saccà: Nucleic acids nanotechnology Methods. 2014, May 15;67(2):103-4. doi: 10.1016/j.ymeth.2014.04.018.
M. Erkelenz, D.M. Bauer, R. Meyer, C. Gatsogiannis, S. Raunser, B. Saccà, C.M. Niemeyer: A Facile Method for Preparation of Tailored Scaffolds for DNA-Origami. Small 2013 Jul 17. doi: 10.1002/smll.201300701.
B. Saccà, B. Siebers, R. Meyer, M. Bayer, C. M. Niemeyer: Nanolattices of switchable DNA-based motors. Small, 2012, 8, 3000-3008. (Highlighted as cover picture)
B. Saccà, C. M. Niemeyer: Covalent tethering of protruding arms for addressable DNA nanostructures. Small 2011, 7, 2887-2898.
B. Saccà, B. Siebers, R. Meyer, M. Bayer, C. M. Niemeyer: Nanolattices of switchable DNA-based motors. Small, 2012, 8, 3000-3008. (Highlighted as cover picture)
B. Saccà, C. M. Niemeyer: Covalent tethering of protruding arms for addressable DNA nanostructures. Small 2011, 7, 2887-2898.
B. Saccà, C. M. Niemeyer: Functionalization of DNA nanostructures with proteins. Chemical Society Reviews, 2011, 40, 5910-5921.
B. Saccà, C. M. Niemeyer: DNA origami: the art of folding DNA. Angew. Chem. Int. Ed. 2011, 51, 58-66.
B. Saccà, R. Meyer, M. Erkelenz, K. S. Rabe, K. Kiko, A. Arndt, C. M. Niemeyer: Orthogonal protein decoration of DNA origami. Angew. Chem. Int. Ed. 2010, 49, 9378-9383.
B. Saccà, R. Meyer, C. M. Niemeyer: Analysis of the self-assembly of 4x4 DNA tiles by temperature-dependent FRET spectroscopy. ChemPhysChem 2009, 10, 3239-3248.
B. Saccà, R. Meyer, C. M. Niemeyer: Temperature-dependent FRET spectroscopy for the high-throughput analysis of self-assembled DNA nanostructures in real time. Nat. Protoc. 2009, 4, 271-285.
B. Saccà, R. Meyer, U. Feldkamp, H. Schroeder, C. M. Niemeyer: High-throughput, real-time monitoring of the self-assembly of DNA nanostructures by FRET spectroscopy. Angew. Chem. Int. Ed. 2008, 47, 2135-2137.
More Publications Area A
- Project A1
Protein-recognition by supramolecular ligands from focused combinatorial libraries (Carsten Schmuck) - Project A2
Natural products as starting structures for the development of supramolecular ligands (Markus Kaiser) - Project A3
Designed copolymers and molecular tweezers for protein surface recognition (Thomas Schrader) - Project A5
Protein-specific nanoparticles for cellular uptake (Matthias Epple) - Project A6
- Project A7
Pareto-optimization of protein-surface targeting supramolecular binders with hetero-avidity (Daniel Hoffmann) - Project A8
Exploring protein-recognition by supramolecular binders with MD and QM/MM methods (Elsa Sánchez-Garcia) - Project A9
Raman spectroscopic monitoring of protein recognition by supramolecular ligands (Sebastian Schlücker)