Z03
Project Area Z - Central Services
Dr. Farnusch Kaschani
Analytics Core Facility Essen (ACE)
Center of Medical Biotechnology (ZMB)
University of Duisburg-Essen
Phone: +49 201 183 4924
Email
Central proteomics support
Mass spectrometry (MS)-based proteomics has evolved into a robust and powerful technology for timely mechanistic molecular biology research and is thus ideally suited to support the investigation of cell state transitions. The Analytics Core Facility Essen (ACE) will provide state-of-the-art high-resolution, label-based or label-free quantitative ‘bottom up’ mass spectrometry-based proteomics as well as the required expertise for sample preparation workflows and data evaluation to all CRC members. This will for example allow to reveal molecular mechanisms regulating cell state transitions by identifying and dissecting protein-protein interactions (using label-free quantification strategies, proximity labelling or crosslinking MS) and characterizing dynamic changes in expression levels or post-translational modification (PTM) patterns in isolates or whole proteomes.
Project Members
Dr. Sabrina Ninck
Publications
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Induced degradation of SNAP-fusion proteinsIn: RSC Chemical Biology (2024) in pressOnline Full Text: dx.doi.org/; Online Full Text: dx.doi.org/ (Open Access)
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Microtubule end-on attachment maturation regulates Mps1 association with its kinetochore receptorIn: Current Biology Vol. 34 (2024) Nr. 11, pp. 2279 - 2293.e6Online Full Text: dx.doi.org/ (Open Access)
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TopBP1 utilises a bipartite GINS binding mode to support genome replicationIn: Nature Communications Vol. 15 (2024) Nr. 1, 1797Online Full Text: dx.doi.org/; Online Full Text: dx.doi.org/ (Open Access)
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Clp-targeting BacPROTACs impair mycobacterial proteostasis and survivalIn: Cell Vol. 186 (2023) Nr. 10, pp. 2176 - 2192.e22Online Full Text: dx.doi.org/ (Open Access)
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Structure of the peroxisomal Pex1/Pex6 ATPase complex bound to a substrateIn: Nature Communications Vol. 14 (2023) Nr. 1, 5942Online Full Text: dx.doi.org/; Online Full Text: dx.doi.org/ (Open Access)
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The UBX domain in UBXD1 organizes ubiquitin binding at the C-terminus of the VCP/p97 AAA-ATPaseIn: Nature Communications Vol. 14 (2023) Nr. 1, 3258Online Full Text: dx.doi.org/ Online Full Text (Open Access)
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Persister state-directed transitioning and vulnerability in melanomaIn: Nature Communications Vol. 13 (2022) Nr. 1, 3055Online Full Text: dx.doi.org/ Online Full Text (Open Access)
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Statins affect cancer cell plasticity with distinct consequences for tumor progression and metastasisIn: Cell Reports Vol. 37 (2021) Nr. 8, 110056Online Full Text: dx.doi.org/ Online Full Text (Open Access)
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A non-autonomous protein quality control mechanism targeting tau aggregate propagation(2024)Online Full Text: dx.doi.org/ (Open Access)
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Conformational plasticity of a BiP-GRP94 chaperone complex(2024)Online Full Text: dx.doi.org/ Online Full Text (Open Access)
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Ipl1-controlled attachment maturation regulates Mps1 association with its kinetochore receptor(2023) 43 SeitenOnline Full Text: dx.doi.org/ (Open Access)